Publications

  1. Zhang, M.; Liu, J.M. Transcription of cis-antisense small RNA MtlS in Vibrio cholerae is regulated by transcription of its target gene mtlA. Journal of Bacteriology. 2019. (paper)
  2. Page, K.; Shaffer, J.; Lin, S.; Zhang, M.; Liu, J.M. Engineering riboswitches in vivo using dual genetic selection and fluorescence-activated cell sorting. ACS Synthetic Biology. 2018, 7, 2000-6. (paper)
  3. Byer, T.; Wang, J.; Zhang, M.G.; Vather, N.; Blachman, A.; Visser, B.; Liu, J.M. MtlR negatively regulates mannitol utilization by Vibrio cholerae. Microbiology. 2017, 163, 1902-1911. (paper)
  4. Liu, J.M.; Sweredoski, M.J.; Hess, S. Improved 6-plex TMT quantification throughput using a linear ion trap – HCD MS3 scan. Analytical Chemistry. 2016, 88, 7471-5. (abstract)
  5. Vasquez, T.E.; Saldaña, C.; Muzikar, K.A.; Mashek, D.; Liu, J.M. Searching for synthetic antimicrobial peptides: An experiment for organic chemistry students. Journal of Chemical Education. 2016, 93 (6), 1103–1107. (paper)
  6. Chang, H.; Replogle, J.M.; Vather, N.; Tsao-Wu, M.; Mistry, R.; Liu, J.M. A cis-regulatory antisense RNA represses translation in Vibrio cholerae through extensive complementarity and proximity to the target locus. RNA Biology 2015, 12, 136-148. (paper)
  7. Mustachio, L.M.; Aksit, S.; Mistry, R.H.; Scheffler, R.; Yamada, A.; Liu, J.M. The Vibrio cholerae mannitol transporter is regulated post-transcriptionally by the MtlS small RNA. Journal of Bacteriology 2012, 194, 598-606. (abstract)
  8. Liu, J.M. & Camilli, A. Discovery of sRNAs by high-throughput sequencing. In: Kwon, Y.M.; Ricke, S.C. eds. Methods in Molecular Biology. Vol 733.New York, NY: Humana Press; 2011.
  9. Liu, J.M. & Camilli, A. A broadening world of bacterial small RNAs. Current Opinions in Microbiology 2010, 13, 8-23. (abstract)
  10. Wang, W.; Zhao, J.; Han, Q.; Wang, G.; Yang, G.; Shallop, A.J.; Liu, J.M.; Gaffney, B.L.; Jones, R.A. Modulation of RNA metal binding by flanking bases: 15N NMR evaluation of GC, tandem GU, and tandem GA sites. Nucleosides, Nucleotides & Nucleic Acids 2009, 28, 424-434. (abstract)
  11. Paley, R.S.; Berry, K.E.; Liu, J.M.; Sanan, T.T. Diastereoselective Intramolecular Pinacol Couplings of Sulfinyl Iron(0) Diene Complexes. Journal of Organic Chemistry 2009, 74, 1611-1620. (abstract)
  12. Liu, J.M.; Livny, J.; Lawrence, M.S.; Kimball, M.D.; Waldor, M.K.; Camilli, A. Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA-depletion and parallel sequencing. Nucleic Acids Research 2009, 37, e46. (abstract)
  13. Liu, J.M. & Liu, D.R. Discovery of a mRNA mitochondrial localization element in Saccharomyces cerevisiae by nonhomologous random recombination and in vivo selection. Nucleic Acids Research 2007, 35, 6750-6761. (abstract)
  14. Liu, J.M.; Bittker, J.A.; Lonshteyn, M.; Liu, D.R. Functional dissection of sRNA translational regulators using nonhomologous random recombination and in vivo selection. Chemistry & Biology 2005, 12, 757-767. (abstract)
  15. Bittker, J.A.; Le, B.V.; Liu, J.M.; Liu, D.R. Directed evolution of protein enzymes using nonhomologous random recombination. Proceedings of the National Academy of Sciences USA 2004, 101, 7011-7016. (abstract)
  16. Paley, R.S.; Liu, J.M.; Lichtenstein, B.R.; Knoedler, V.L.; Sanan, T.T.; Adams, D.J.; Fernandez, J.; Rablen, P.R. Simultaneous and stereoselective formation of planar and axial chiralities in enantiopure sulfinyl iron diene complexes. Organic Letters 2003, 5, 309-312. (abstract)